2
Small angle neutron scattering (SANS) and rheological measurements have been used to study horse heart cytochrome C, a globular protein characterized by approximately spherical shape (a × b × b = 15 × 17 × 17 Å3) with a molecular weight of 12 384 Da and a pI = 10.2.
Type: Object |
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3
Two series of very concentrated protein solutions have been investigated at pD 5.4 and 11.0, respectively, the volume fraction of the protein spanning from 0.1 to 0.5.
Type: Object |
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4
The Krieger–Dougherty model was applied to describe the relation between relative high shear viscosity of the solution and volume fraction of the protein at both pD in order to elucidate the charge effect on the interaction potential.
Type: Model |
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ConceptID: Mod1
5
The SANS intensity distributions at pD 5.4 were fitted using the GOCM model with an excellent agreement between the theory and experiments up to the volume fraction ϕ of 0.4.
Type: Result |
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ConceptID: Res1
6
At pD 11.0 the intensity distribution at ϕ = 0.1 can be fitted with a pure form factor (oblate ellipsoid), suggesting that under this condition the cytochrome C molecules are almost uncharged and preserve the native molecular size.
Type: Conclusion |
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ConceptID: Con1
7
Addition of salt induces the transformation from liquid to a gel.
Type: Observation |
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ConceptID: Obs1
8
This is a result of formation of ordered fractal clusters internally as evident from appearance of a second interaction peak at very low Q (magnitude of the scattering vector).
Type: Conclusion |
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ConceptID: Con2
9
The appearance of the low Q peak is also accompanied by a strong increase in the relative viscosity.
Type: Result |
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ConceptID: Res2
10
These phenomena taken together can be considered as the signature of the gelation process.
Type: Conclusion |
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ConceptID: Con3
Introduction
11
Proteins play a critical role in almost all biological processes, and the understanding of the physical basis of their mutual interactions is a key to this understanding.
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12
In order to develop a model that describes the interactions among biological macro-ions leading to a general theory of liquid-crystal transition, it is essential to have a clear picture of the forces acting among proteins in solution.1,2
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13
Surface charge and inter-particle interactions of globular proteins can be easily modulated by varying pH, salt concentration and temperature.
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ConceptID: Bac3
14
Protein solutions are stable when Coulombic repulsions dominate the attractive interactions.
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15
At the isoelectric point, pI, the number of positively charged groups equals the number of negatively charged ones and the protein solubility drastically drops with formation of amorphous precipitates.3–5
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16
In order to overcome this inconvenience some repulsive contributions at the interactions potential have to be preserved.
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17
This is typically obtained by using a pH far from the isoelectric point and adding a salt whose counter-ions partially screen the charges on the proteins.
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ConceptID: Bac6
18
The optimal crystallization conditions are strongly linked with a salt concentration able to reduce the range of electrostatic repulsions at distances where the attractive forces are effective (i.e. the Debye length is shorter than macro-ion diameter).
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19
A very intriguing effect is the so-called ‘Hofmeister anion effect’:6 in fact different salts at the same ionic strength produce different effects on the weak balance between attractive and repulsive forces.
Type: Background |
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20
The complexity of this phenomenon is evident: protein concentration, temperature, pH, ionic strength and nature of the added salt and kinetic aspects have to be taken into account when trying to obtain good protein crystals.
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ConceptID: Bac9
21
The easiest way to relate easily measurable solution properties with crystallization conditions is to assimilate proteins to colloidal particles hence using their well-known models.
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ConceptID: Bac10
22
George and Wilson7 studied under-saturated lysozyme solutions in crystallization condition.
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23
They employed the static light scattering to determine the sign and magnitude of the virial coefficient, B, thus characterizing concretely the net interaction.
Type: Method |
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24
In all cases, negative values of B were obtained.
Type: Background |
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ConceptID: Bac11
25
Muschol and Rosenberger extended previous studies to lysozyme solutions in conditions of over-saturation8–10 confirming that the virial coefficient, B, must be negative in order to have optimal crystallization conditions.
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ConceptID: Bac12
26
Both these approaches were based on the DLVO11,12 description of the intermolecular interactions.
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ConceptID: Bac13
Type: Method |
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ConceptID: Met2
28
Lysozyme and cytochrome C are excellent model systems since their shape is globular and very close to a sphere.
Type: Motivation |
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ConceptID: Mot1
29
Due to the strong absorbance at 410 nm the cytochrome C cannot be studied by light scattering as usually happens with lysozyme.
Type: Background |
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ConceptID: Bac14
30
However, cytochrome C solution properties are accessible by using small angle neutron and X-ray scattering techniques (SANS, SAXS), even though the information obtained by these latter techniques cover a smaller length scale range.
Type: Background |
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ConceptID: Bac15
31
Wu et al. adopted another effective approach to the problem of protein interactions.
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32
They performed SANS and SAXS experiments on cytochrome C in aqueous solutions up to volume fractions ϕ of about 0..1816,17
Type: Method |
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Novelty: Old |
ConceptID: Met3
Type: Method |
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Novelty: Old |
ConceptID: Met3
34
Using this model, they extracted some protein parameters at different pD values: the hydrated diameter, the amount of hydration, the degree of H/D exchange with the solvent and the renormalized charge.
Type: Background |
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ConceptID: Bac16
35
Besides, they compared the renormalized charge obtained through the fitting procedure with the charge measured by conventional titration experiments and found good agreement at intermediate pD values, i.e. at pD = 6..816
Type: Background |
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ConceptID: Bac17
36
However, at extreme pD values (i.e. 2.9 and 11.9) they obtained the renormalized charge significantly lower than the titration charge and attributed this discrepancy to the so-called charge renormalization phenomenon.17
Type: Background |
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37
Microscopically, this can be explained as the result of a piling up of counter-ions near the protein surface, the analogue of the charge condensation phenomenon in rod-like particles such as DNA.
Type: Background |
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ConceptID: Bac18
38
Thus, as far as the protein–protein interactions are concerned, counter-ions behave like a part of the protein itself.
Type: Background |
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ConceptID: Bac19
39
Regardless of the charge renormalization phenomenon, the essential point of their work is that they were able to relate the results of scattering experiments to the thermodynamic properties of the protein solutions.
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ConceptID: Bac20
40
In this paper we extended previous studies16,17 to the investigation of concentrated cytochrome C solutions.
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ConceptID: Obj1
41
Two limiting cases were taken into account: a series at pD 5.4 exhibiting long-range repulsion and a very weak attractive interaction and a series at pD 11.0 where the short-range attractions are more prominent.
Type: Object |
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ConceptID: Obj1
42
Horse heart cytochrome C is a globular protein consisting of 104 amino acids, 12 negatively charged (Glu, Asp) and 21 positively charged (Lys, Arg) and characterized by a pI = 10.2.
Type: Background |
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ConceptID: Bac21
43
Its molecular weight is 12 384 Da and its shape in aqueous solutions is approximately spherical (a × b × b = 15 × 17 × 17 Å3).
Type: Background |
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ConceptID: Bac21
44
In this study we tune, to some extent, the intermolecular interactions by changing protein concentration, pD and adding two salts differing in the anions.
Type: Method |
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ConceptID: Met4
45
SANS and rheological measurements have been performed on solutions with volume fraction ranging from 0.1 to 0.5 at two different pD (5.4 and 11.0) values.
Type: Method |
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ConceptID: Met4
46
The details of samples composition and preparation are described in the next section.
Type: Background |
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ConceptID: Bac22
Experimental section
Material
47
Cytochrome C from horse heart (product no.
Type: Experiment |
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ConceptID: Exp1
48
C7752) was purchased from Sigma Chemical Company.
Type: Experiment |
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ConceptID: Exp1
49
This product is obtained using a procedure that avoids trichloroacetic acid (TCA), which is known to promote the dimer formation in favor of the native protein.
Type: Background |
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ConceptID: Bac23
50
Two sets of five cytochrome C samples in D2O at different pD, 5.4 and 11.0, were prepared for SANS and rheological measurements; both of them contain protein volume fraction, ϕ, ranging from 0.1 to 0.5.
Type: Experiment |
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ConceptID: Exp2
51
A list of the sample composition is reported in Table 1.
Type: Experiment |
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ConceptID: Exp2
52
Samples at pD 5.4 were obtained just dissolving cytochrome C in D2O; those ones at pD 11.0 were prepared adding different volumes of 2 N NaOH/D2O solution.
Type: Experiment |
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ConceptID: Exp3
53
NaN3 at a concentration of 0.2 mg ml−1 was added to all samples in order to avoid bacterial growth.16
Type: Experiment |
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ConceptID: Exp4
54
The ionic strength, I*, has been calculated considering only the NaOH contribution in the case of pD = 11.0.
Type: Method |
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Novelty: New |
ConceptID: Met4
55
All the samples were prepared few days before the experiment was performed in order to allow H–D exchange.
Type: Experiment |
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ConceptID: Exp5
56
The same samples have been used for both rheological and SANS measurements.
Type: Experiment |
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ConceptID: Exp6
Methods
57
Rheological measurements were carried out with a stress-controlled rheometer, Paar Physica Universal Dynamic Spectrometer UDS 200.
Type: Experiment |
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ConceptID: Exp7
58
The experiments have been performed with a ‘cone-plate’ geometry designed for handling small quantities of sample.
Type: Experiment |
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ConceptID: Exp8
59
To limit the amount of protein needed for the measurement, the cone had a radius 12.5 mm and was placed at 0.05 mm from the plate resulting in a theoretical shear stress range from 0.122 Pa to 36 669 Pa.
Type: Experiment |
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ConceptID: Exp8
60
We performed flow curves varying the shear stress and measuring the shear rate; the viscosity of each point is automatically calculated as the ratio between the preset shear stress and the measured shear rate.
Type: Method |
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ConceptID: Met4
61
All measurements were carried out at a temperature of 20.0 ± 0.1 °C which was regulated by a controlled peltier system (TEZ 150P) coupled with a Haake circulating bath.
Type: Experiment |
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ConceptID: Exp9
62
The measurements were carried out by imposing a shear stress ranges from 0.22 to 2 Pa or 0.2–15 Pa or 0.2–130 Pa according to the sample viscosity.
Type: Experiment |
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ConceptID: Exp10
63
Neutron measurements were performed at the NG-7 SANS instrument at the NIST Center for Neutron Research (Gaithersburg, MD) using incident monochromatic neutrons of wavelength λ = 5 Å with Δλ/λ = 10%.
Type: Experiment |
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ConceptID: Exp11
64
The sample to detector distance was fixed at 2.5 m, covering the magnitude of scattering vector, Q, from 0.0125 to 0.32 Å−1.
Type: Experiment |
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ConceptID: Exp12
65
The detector was a 65 × 65 cm23He position-sensitive proportional counter having a 5 × 5 mm2 resolution.
Type: Experiment |
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ConceptID: Exp13
66
The neutron beam on the sample was 1.6 cm in size and circular in shape.
Type: Experiment |
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ConceptID: Exp14
67
The instrumental resolution was taken into account in the model but its effect was negligible since the experimental spectra do not present sharp peaks.
Type: Background |
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ConceptID: Bac24
68
Standard (UV) quartz micro-cylindrical cells having a path length equal to 1 mm were used for low viscosity samples.
Type: Experiment |
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ConceptID: Exp15
69
High viscosity samples (ϕ = 0.4 and 0.5) were contained in titanium demountable cells having two flat quartz windows and being 1 mm in path length.
Type: Experiment |
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ConceptID: Exp16
70
Since the transmission of samples spanned from 90% (for the 0.1 of protein in volume fraction) to about 80% (for the 0.5 of protein in volume fraction) the multiple-scattering effect was not taken into account.
Type: Observation |
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ConceptID: Obs2
71
The measured intensity was corrected for background and empty cell contributions, and for non-uniformities in the detector efficiency by dividing data, pixel-by-pixel, by the measured scattering from an isotropic scatterer, such as plexiglass.
Type: Method |
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ConceptID: Met4
72
The data have been rescaled to the absolute intensity by a direct measuring of the beam flux at the sample.
Type: Method |
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ConceptID: Met4
73
The I(Q) versusQ data were obtained by a circular average of the so-obtained two-dimensional absolute intensity detector image.
Type: Method |
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ConceptID: Met4
74
The overall data reduction was carried out according to the standard NIST procedures.19
Type: Model |
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ConceptID: Mod2
75
All the neutron scattering experiments have been performed at T = 20.0 ± 0.1 °C and no condensation of water was present on the quartz cell windows.
Type: Experiment |
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ConceptID: Exp17
Results and discussions
76
Rheological properties of concentrated cytochrome C solutions have been monitored using steady-state viscosity measurements.
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ConceptID: Obj2
77
Viscosity curves are reported in Figs. 1 and 2 and show the trend of viscosity as a function of the shear rate for all investigated samples.
Type: Observation |
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ConceptID: Obs3
78
All measurements were performed controlling the shear stress, so that the shear rate range depends on the sample viscosity.
Type: Method |
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ConceptID: Met4
79
Initial experimental values are 1 s−1 in all cases except for the solutions with ϕ = 0.5 at pD 11.0 and at pD 5.4 where the shear rates start from about 0.05 s−1 and 0.5 s−1, respectively.
Type: Observation |
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ConceptID: Obs4
80
Rheological behavior of charged colloidal particles has been intensively studied in the case of diluted solutions and three main electroviscous effects have been found.20
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ConceptID: Bac25
81
The so-called “primary electroviscous effect” is due to the interactions of the diffuse double layer around each particle; the “secondary electroviscous effect” can be explained in terms of balance of electrostatic repulsive force and hydrodynamic compressive force on each particle; the “tertiary electroviscous effect” is influenced by the particle shape.
Type: Model |
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ConceptID: Mod3
82
A solution of strongly interacting colloidal particles at high volume fractions and low electrolyte concentrations orders into crystalline lattices at rest.
Type: Model |
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ConceptID: Mod3
83
If shear is applied, the flow concentrates stress above all at lattice dislocations where particles are loosely trapped.
Type: Model |
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ConceptID: Mod3
84
Under flow, the solution's microstructure can be modeled as a ‘blend’ made up of a solid ordered phase coexisting with a fluid disordered phase and when shear rate increases the disordered phase rises above the ordered one.
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85
How exactly these phases are organized is still unclear.21
Type: Background |
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ConceptID: Bac26
86
The rheological behavior of the solutions we investigated is consistent with this model: the shear leads to a destruction of the ordered structure and the so-called shear-thinning behavior is observed (i.e. the shear viscosity decreases as shear rate increases).
Type: Model |
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ConceptID: Mod3
87
Usually, pseudo-plastic solutions have a flow curve characterized by three regions with the shear-thinning zone surrounded by two Newtonian plateaus at the edges of the shear rate range.22,23
Type: Background |
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ConceptID: Bac27
88
Sometimes the low shear Newtonian regions can lie outside the shear rate range accessible to the instrument as in the cases reported in this paper.24
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ConceptID: Bac28
89
Unfortunately, due to instrumental limits, the first Newtonian plateau is experimentally detected only for the sample having ϕ = 0.5 at pD 11.0 since our ‘cone-plate’ geometry has the intrinsic instrumental lower limit in the shear stress of 0.122 Pa.
Type: Observation |
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ConceptID: Obs5
90
As expected, the high-shear viscosity exploits a strong concentration dependence increasing with volume fraction and reaching the maximum value in the case of ϕ = 0.5 at pD = 11.0.
Type: Observation |
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Novelty: None |
ConceptID: Obs6
91
In order to quantitatively describe the flow curves the Sisko approach has been used (eqn. (1)).
Type: Model |
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Novelty: None |
ConceptID: Mod4
92
This relatively simple model25,26 is useful to describe a shear-thinning behavior in presence of the high shear plateau only: η = η∞ + Kn−1where K is the consistency index, n is the flow behavior index and η∞ is the limit viscosity at infinite shear rate.
Type: Model |
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ConceptID: Mod4
93
The parameter K gives an indication of the non-Newtonian nature of the sample and can be assimilated to the yield stress in a Bingham-type fluid.
Type: Model |
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ConceptID: Mod4
94
When K = 0 or n = 1, the model describes a simple Newtonian fluid.
Type: Model |
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Novelty: None |
ConceptID: Mod4
95
The results obtained from the fitting of the experimental data and using the Sisko model are reported in Fig. 3a and the related parameters are listed in Table 2.
Type: Observation |
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ConceptID: Obs7
96
Only the low concentration cases (ϕ = 0.1 and 0.2) can be reasonably fitted.
Type: Result |
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ConceptID: Res3
97
The K value turns out to be about 0.2 for all low volume fraction samples, while n gradually decreases, increasing ϕ consistently with a “less Newtonian behavior”.
Type: Result |
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ConceptID: Res3
98
The viscosity curve relative to the sample ϕ = 0.4 at pD 11.0 almost resembles a Newtonian behavior in the shear rate range we investigated, whereas the sample ϕ = 0.5 at pD 11.0 behaves more like a pseudo-plastic fluid and two Newtonian regions are detected.
Type: Result |
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ConceptID: Res3
99
This last sample has been fitted using the Cross model23,25 (Fig. 3b): where η0 and η∞ are the zero shear and the infinite shear viscosities, 4.56 and 1.78 Pa.s, respectively.
Type: Model |
Advantage: None |
Novelty: None |
ConceptID: Mod5
100
In the same volume fraction case at pD 5.4 the curve exploits a Newtonian behavior with a viscosity equal to 0.35 Pa.s.
Type: Observation |
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Novelty: None |
ConceptID: Obs8
101
The viscosity trend of samples at high volume fraction can be rationalized in terms of electrostatic charge on the molecules and their aggregation behavior.
Type: Model |
Advantage: None |
Novelty: None |
ConceptID: Mod6
102
Electrostatic interactions influence the rheological behavior of solutions: in high concentrated solutions electrostatic interactions overcome Brownian interactions and order occurs, and obviously the electrostatic interactions experienced by the particles depend on their superficial charge.
Type: Model |
Advantage: None |
Novelty: None |
ConceptID: Mod6
103
Generally, in charged systems the viscosity increases with the effective surface charge,27 but this is not our case.
Type: Observation |
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Novelty: None |
ConceptID: Obs9
104
At pD 5.4, molecules have a great positive charge (pI = 10.2) and consequently experience higher electrostatic repulsions with respect to pD = 11.0 where the charge is almost zero, but shear viscosities relative to pD 11.0 are higher than those at pD 5.4.
Type: Background |
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ConceptID: Bac29
105
This means that another effect contributes to the rheological behavior of the investigated systems, i.e. the aggregation phenomenon is surely favored at pD 11.0 due to the attractive surface of the low charged protein; moreover, this effect enhances with concentration.
Type: Model |
Advantage: None |
Novelty: None |
ConceptID: Mod7
106
Fig. 4 shows the relative limiting high-shear viscosity, ηrel = η/η0, as a function of ϕ both for pD 5.4 and pD 11.0.
Type: Observation |
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Novelty: None |
ConceptID: Obs10
107
Rheological behavior of the system can give some insight into the interaction between particles.
Type: Background |
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Novelty: None |
ConceptID: Bac30
108
Furthermore, the strength of the interactions can be estimated varying shear rate conditions.
Type: Background |
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ConceptID: Bac30
109
In particular, if an appropriate model can represent the data, the evaluation may be more convenient and effective.
Type: Background |
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Novelty: None |
ConceptID: Bac31
110
Several models have been developed that can be applied to describe the relation between relative viscosity of the samples and volume fraction of the particles in the system.28
Type: Background |
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Novelty: None |
ConceptID: Bac32
111
One of the well-known correlations is the Krieger–Dougherty model: where the parameters to be fitted [η] and ϕmax are the intrinsic viscosity and the volume fraction corresponding to the maximum packing, respectively, while η0 is the solvent viscosity.
Type: Model |
Advantage: None |
Novelty: None |
ConceptID: Mod8
112
Table 3 reports [η] and ϕmax at the limit shear-rate and 100 s−1.
Type: Observation |
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Novelty: None |
ConceptID: Obs11
113
The maximum packing fraction and the intrinsic viscosity appears to be almost shear-rate independent, increasing shear rate the particles packing is already defined by the repulsive or attractive interaction.
Type: Result |
Advantage: None |
Novelty: None |
ConceptID: Res4
114
At lower shear rates the model is not applicable since all the viscosity curves collapse.
Type: Observation |
Advantage: None |
Novelty: None |
ConceptID: Obs12
115
The behavior of the concentrated solution changes from a liquid-like to a solid-like as the volume fraction approaches the maximum packing fraction.
Type: Observation |
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Novelty: None |
ConceptID: Obs13
116
Different values have been reported in the literature for the maximum packing fraction of suspensions of monodisperse particles.
Type: Background |
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ConceptID: Bac33
117
These results indicate that the maximum packing fraction may change significantly with purity, shape, relative monodispersity of the particles, and the level of accuracy of experiments.
Type: Result |
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ConceptID: Res5
118
Even different models may predict different values for the maximum packing fraction of the same system.
Type: Background |
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ConceptID: Bac34
119
As a reference it is worth to repeat that a system constituted of perfect spheres has an intrinsic viscosity value equal to 2.5 and this value strongly depends on the shape of molecules.25
Type: Background |
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ConceptID: Bac34
120
The calculated values of [η] for cytochrome C concentrated solutions using Krieger–Dougherty model gives much larger values than 2.5.
Type: Observation |
Advantage: None |
Novelty: None |
ConceptID: Obs14
121
It is known that the intrinsic viscosity of suspensions is affected by the shape and surface roughness of the particles and, since in our system the protein molecules are not exactly spherical, we believe that this may be a reason for the high value of the intrinsic viscosity of the samples.
Type: Hypothesis |
Advantage: None |
Novelty: None |
ConceptID: Hyp1
122
Additionally, the polydispersity of the samples as well as the aggregation may also be responsible for the high intrinsic viscosity.
Type: Hypothesis |
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Novelty: None |
ConceptID: Hyp1
123
In particular, the deviations from the spherical symmetry cause an increase in magnitude [η] that usually ranges from 2.5 (spheres) to 10 (plates).
Type: Background |
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So the obtained values of 5.0 and 5.9, for pD 5.4 and 11.0 respectively, are a reasonable consequence of the ellipsoidal native shape of the cytochrome C mixed with the high complexity of the investigated solutions that involves some sort of aggregation to give more asymmetric structures especially in the case of higher pD confirming that the aggregation is favored by the low surface charge.
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125
Anyway, our sample seems to behave like titanium dioxide suspensions which have [η] = 5.0 and ϕmax = 0..5529
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126
Moreover, ϕmax values found for the cytochrome C are very similar to those relative to the system of PMMA particles28 that have been defined as a quasi-hard sphere system.
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127
If we compare the ϕmax values at the two different pD we observe that system at higher pD values is characterized by higher ϕmax values.
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128
In particular, the electrostatic interactions become less effective while shear rate increases, so we can conclude that in the high shear rate region excluded volume effects are more effective than electrostatic ones in causing maximum packing values.
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129
We anticipate here that addition of salts belonging to the Hofmeister series produces a consistent increase in the intrinsic viscosity with a concomitant appearing of two peaks in the small angle neutron scattering spectra (see below and Fig. 11).
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130
We will discuss exhaustively this finding in a forthcoming paper but we can anticipate this is the signature of protein gelation induced by co-ions addition to cytochrome C.
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131
In order to have a deeper insight into the structure, SANS measurements were carried out on all samples.
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132
The spectra are showed in Figs. 5 and 6.
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133
The main characteristic of these spectra is the maximum in the scattering intensity distribution.
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134
Chen et al16,17. reported similar results, obtained by experiments on cytochrome C in aqueous solutions within a range of volume fractions from 0.05 to 0.18.
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135
The presence of a very pronounced interaction peak in the scattering intensity distribution is indicative of local order around macro-ions due to their electrostatic repulsions.
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136
In our case, it is evident that at pD 11.0 the peak appears at volume fractions greater than 0.3, that means molecules start interacting at a closer distance.
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137
This can be easily explained in term of lower charge on molecules and consequently lower electrostatic potential experienced since pD 11.0 is very close to the isoelectric point pI = 10.2 and the protein charge very close to zero.
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ConceptID: Res9
138
Another interesting feature is the concentration dependence of the peak position, Qmax as expected.
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ConceptID: Res10
139
It moves to higher Q values when the volume fraction increases.
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ConceptID: Res10
140
The peak position can be used to deduce the molecular packing in solutions through a phenomenological approach already used by Chen et al. in the case of lithium dodecyl sulfate micellar solutions30 since it is associated with the reciprocal mean inter-particle distance.
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141
If we assume a face center cubic (fcc) like structure we can calculate the mean intermolecular distance, d, from the protein concentration using the formula: where NA is Avogadro's number and [c] is the protein molar concentration.
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142
The fcc packing has been chosen in agreement with previous work.30
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143
This spatial disposition allows all the charged macro-ions to be at the same distance to their first neighbors, while the simple cubic ordering forces some macro-ion to stay closer than others.
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144
It is worthy to note that the two dimensional SANS images did not show any diffraction peak in agreement with a globally disordered sample.
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ConceptID: Res11
145
In Fig. 7 we report Qmaxd as a function of d; the values we used are listed in Table 4.
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146
The linear trends obtained are respectively: Qmaxd = 8.434 – 0.0334d at pD = 5.4Qmaxd = 16.975 – 0.2869d at pD = 11.0They are in agreement with previous literature results and confirm the hypothesis that the increased volume fraction generates a high packing structure, following in this case an fcc disposition.
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ConceptID: Res12
147
It must be underlined that these two curves cross at about 33 Å, which is the protein diameter.
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148
It is essential to point out that this phenomenological approach is not accurate and only qualitatively describes the packing process induced by the increase in volume fraction since the interaction peaks coming from the spectra are not Bragg peaks.
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149
In order to fit the experimental data quantitatively we used the following equation: I(Q) = ApP(Q)S(Q)where Ap is the amplitude factor.
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ConceptID: Mod10
150
In the case of a globular protein cytochrome C, it is given by: 10−3[p]NA[bpa + Nex(bD − bH)χ + mbsolv − VHbsolv/vω]2where NA is Avogadro's number, [p] the protein concentration in mM, bpa = ∑p bi = 258.5164 × 10−12 cm the total scattering length of the protein, Nex the number of labile protons that the protein can exchange with the solvent, bH and bD are respectively the scattering length of the hydrogen and deuterium, m is the number of solvent molecules in the hydration shell, VH is the hydrated protein volume, vω = 30 Å3 is the volume of a water molecule, bsolv is the solvent scattering length calculated each time according to the sample composition using the formula bsolv = χbD2O + (1 − χ)bH2O where χ is the volume fraction of D2O in the solvent and bD2O and bH2O are respectively the D2O and H2O scattering length.
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151
All these parameters are known, in particular the amount of H/D exchange of the protein in D2O heavy water-containing solvents and the hydration have been experimentally obtained through contrast variation measurements:16Nex = 165 and m = 112.
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ConceptID: Bac42
152
The P(Q) is the normalized form factor for a core-shell oblate ellipsoid (a × b × b) having the axis ratio, a/b = 0.88235, in agreement with previously published results16 and assuming the presence of an hydration shell coming from the adsorption of water molecules at the protein surface.
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ConceptID: Res13
153
The protein structure factor, S(Q), has been determined according to the generalized one-component macro-ion model (GOCM) already tested.30
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ConceptID: Mod12
154
As said above the GOCM extends the OCM based on DLVO interaction, which is valid only in dilute solutions, to finite macro-ion concentrations.
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ConceptID: Mod12
155
A protein solution is described as made up of charged macro-ions experiencing screened Coulomb interaction.
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156
In order to calculate the scattering length densities we assumed that a protein in solution to be consisted of a uniform core surrounded by (about 20% of the protein) a hydrated outer shell.
Type: Hypothesis |
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ConceptID: Hyp2
157
Hence the parameters free to change are the major core axis b, the charge, the background and the volume fraction.
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158
In the case of pD = 5.4 the described model works well with the experimental spectra up to a volume fraction of 0.4.
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ConceptID: Res1
159
At greater volume fractions the model fails in the determination of the protein charge, Z.
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160
In particular, we obtained a mean value of the major axis of 16.0 ± 1.5 Å with a core major axis of 14.0 ± 1.5 Å and the protein charge is about 4.5 ± 0.5 (Table 5) for all volume fractions with the exception of ϕ = 0.5 where the consistently high value of 10.5 is obtained.
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ConceptID: Res14
161
This could be due to the fact that a short-range attractive interaction becomes important when the protein molecules are forced to partially overlap.
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162
This extra contribution is not taken into account by the electrostatic potential that describes S(Q) (see Fig. 5 and Table 5 and in particular note that the peak at ϕ = 0.5 is by far sharper than the other lower volume fraction cases, 0.1–0.4).
Type: Conclusion |
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163
The theoretical protein charge value calculated through the pKa values of protein residues31 is about 8.9 and is higher than the one we reported (see Table 7).
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164
In order to explain such a result, we must invoke the so-called charge renormalization phenomenon.17
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165
The protein charge reported in the tables is an interaction charge and not the actual charge on the protein surface.
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ConceptID: Mod14
166
The interaction charge is the charge really experienced by protein and it is the surface charge due to the ionization of external residues reduced by the counter ions that adsorb at interface and are part of the protein itself.
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ConceptID: Mod14
167
Concerning samples at pD 5.4 we calculated the structure and form factor using the GOCM model and Figs. 8 and 9 show the trend of S(Q) and P(Q), respectively.
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168
We can note that going from ϕ = 0.1 to 0.5 the first interaction peak moves at higher Q values and its intensity increases.
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169
Besides, S(Q → 0) reduces on raising the protein concentration.
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170
In the case of pD 11.0 the experimental scattering curve relative to ϕ = 0.1 was fitted using only the ellipsoidal form factor (see Fig. 6b and Table 6).
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ConceptID: Obs20
171
The protein at pD 11.0 and ϕ = 0.1 presents a negligible inter-particle interactions.
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ConceptID: Obs21
172
Unfortunately, the only form factor approach and the GOCM model fail to describe volume fractions higher than 0.1.
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173
At this pD, the protein charge is low and some other effects, different from the electrostatic one, dominate the intermolecular potential and are not considered in the description.
Type: Conclusion |
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ConceptID: Con6
174
A new theoretical framework is under development in order to account the short-range attraction potential and will be the subject of a forthcoming paper.
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175
As at this pD we were unable to extract the S(Q) through GOCM, we estimated an “experimental structure factor” S′(Q), obtained by dividing the scattering intensity distribution, I(Q), by the form factor, P(Q), obtained from the fitting of data at ϕ = 0.1 (see Fig. 6b).
Type: Observation |
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ConceptID: Obs23
176
These experimental structure factors are shown in Fig. 10.
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177
They look qualitatively different from the structure factors at pD = 5.4 shown in Fig. 8.
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ConceptID: Obs24
178
SANS experiments were also performed on protein solutions with volume fractions 0.3, 0.4 and 0.5 at pD = 11.0, in the presence of NaCl and NaSCN in a range of concentrations from 0.1 M to 2.8 M. In some of these samples we detected the presence of a second interaction peak at small Q values.
Type: Method |
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179
As an example, Fig. 11 shows the SANS spectra taken at the protein volume fraction 0.4 with the presence of NaCl and NaSCN at concentrations 1.9 and 1.2 M, respectively.
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180
The presence of the second peak is clearly due to a protein cluster formation favored by the screening of the protein charge and the appearance of an attractive force induced by salt, and can be considered as the signature of the gelation process.
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181
Fig. 11 emphasizes clear evidence that both the position and magnitude of the “cluster related” peak are affected by both the concentration and the nature of the salt anion.
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182
In particular, a lower concentration of NaSCN causes a stronger cluster formation (the peak position in Q at 0.05 Å−1 instead of 0.1 Å−1 in the presence of NaCl, along with a higher amplitude of the peak.
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183
The stronger NaSCN effect can be related to the well-known Hofmeister effect.6
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184
A quantitative description of the gelation process is in progress and will be reported in a forthcoming paper.
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ConceptID: Bac46
Conclusions
185
In this paper we studied the pD and concentration effect on the intermolecular interactions among cytochrome C molecules using small angle neutron scattering and rheological experiments.
Type: Goal |
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186
The concentration effect is quite obvious: increasing the number of molecules per unit volume, the protein macro-ions are forced to stay closer generating a stronger interaction potential.
Type: Conclusion |
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ConceptID: Con7
187
This is confirmed both by the position of the interaction peak in the SANS intensity distribution and by the increase in viscosity of the sample.
Type: Conclusion |
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ConceptID: Con7
188
It is well known that the surface charge on proteins and consequently their mutual interactions depend on the H+ concentration in solution.
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189
Two pD values were chosen in such a way that a strongly positive charged situation was compared with a weakly negatively charged one, both with the protein in the native state.
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ConceptID: Goa4
190
The SANS spectra at pD = 5.4 were fitted using the GOCM and a good agreement between the theory and experiments up to a volume fraction of 0.4 was shown.
Type: Result |
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ConceptID: Res1
191
At pD = 11.0, the spectrum at ϕ = 0.1 is a pure form factor (oblate ellipsoid).
Type: Result |
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192
We found that at pD = 5.4 and for volume fraction of 0.5 and for all volume fractions at pD = 11.0 the GOCM fails.
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ConceptID: Res20
193
This is probably due to the presence of some attractive contribution in the interaction potential that the GOCM does not take into account.
Type: Conclusion |
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ConceptID: Con8
194
This part of the potential becomes effective at high concentration of charged molecules (ϕ = 0.5 and pD = 5.4) and for volume fractions higher than 0.1 in the case of uncharged molecules (pD = 11.0).
Type: Result |
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ConceptID: Res21
195
The main consequence of this attractive interaction is the occurrence of an aggregation phenomenon also confirmed through rheological measurements.
Type: Conclusion |
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ConceptID: Con9
196
Viscosity values at pD = 11.0 are higher than those at pD 5.4 in contrast with the usual findings that the higher the surface charge the higher the viscosity.
Type: Conclusion |
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ConceptID: Con10
197
So the trend of high shear viscosity as function of concentration and pD as well as the maximum packing values can be rationalized only by invoking an attractive interaction among proteins that overcomes the standard coulombic repulsion.
Type: Conclusion |
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ConceptID: Con11
198
The behavior of high concentrate protein solutions in the presence of salt belonging to the Hofmeister series is reported.
Type: Result |
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ConceptID: Res8
199
Addition of salt induces the transformation from liquid to a gel.
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200
This is a result of formation of ordered fractal clusters as is evident from appearance of a second interaction peak at very low Q (magnitude of the scattering vector).
Type: Conclusion |
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201
The appearance of the low Q peak that is also accompanied by a strong increase in the relative viscosity can be considered as the signature of the gelation process.
Type: Conclusion |
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ConceptID: Con3